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Re: Callophrys Pupae?
by 58chevy » Sat Dec 14, 2024 8:38 pm
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Re: Callophrys Pupae?
by adamcotton » Sat Dec 14, 2024 8:51 am
That is a very good field photo for something so small. It certainly looks like the abdominal segments of a pupa and the shape is similar to the reference picture. Whether it is Callophrys mossii hidakupa or another species/genus/family is rather difficult to ascertain from the photo, and I am totally unfamiliar with the fauna in Southern California.
Note that species and subspecies names should always be written with a small first letter, only genus names start with a capital letter.
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Callophrys Pupae?
by Seth Mueller » Sat Dec 14, 2024 7:24 am
Recently, I've been trying to photograph a rare butterfly from Southern California. Its Callophrys Mossii Hidakupa, and there has been a location in the San Bernardino Mountains historically. It hasn't been seen in about 20 years at that spot. I went out last month to check out the exact canyon where it's hostplant is abundant. Even though the species does not emerge until April, I sifted through some of the host plant (a species of Sedum) to see if I could find anything, maybe pupae. I pulled out what I thought was another leaf, but it took me by surprise. I snapped a quick picture of it and then dropped it thinking it wasn't anything important. Once I got home, I reviewed the image I took and it looks suspiciously like the bottom part of a lycaenidae pupae. If it is, it was found at the base of Mossii's host plant, indicating it's very likely Callophrys Mossii Hidakupa. I wanted to come on here and ask if anyone agrees or has another diagnosis.
I'll insert the image I took (hopefully it's visible) and I'll follow that with a reference picture I found online. Let me know your thoughts, Is this part of a lycaenidae pupae? Is this even a pupae at all?
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Re: Christmas Bugs
by Panacanthus » Fri Dec 13, 2024 6:49 pm
Trogonoptera brookiana
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Re: Christmas Bugs
by wollastoni » Fri Dec 13, 2024 5:03 pm
More info on this wonderful species here : https://www.delias-butterflies.com/spec ... s-ellipsis
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Re: How Genetic studies reveal new relationships, species
by Chuck » Fri Dec 13, 2024 1:01 pm
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many of Huang's friends didn't like the idea that there could be several species within what looked to them like a single species. A number of Huang's illustrated mandarinus group specimens were misidentified (his so-called 'hybrids' were actually 1st generation G. confucius, and several other specimens were misidentified)
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To demonstrate the ambiguity in COI: a soon-to-be-published paper has both COI 3’ and 5’ tree diagrams for P rutulus and eurymedon. One of the trees highly suggests that one is a ssp of the other; the other tree slightly suggests it might be the other way around.
Further, only some specimens of said ssp fall under the other species; but other specimens group oddly, kinda all over the place, including one level up. I believe these inferences to not reflect the real situation, however it has happened for other taxa that “one species” has been split, some elevated, etc.
The lesson is that COI trees for 3’ and 5’ don’t always agree, and any tree built with few, or ONE, specimen are highly suspect to the point of being useless at species level and below. That’s where SNP and other analyses shed more light.
To be clear COI is useful, and more so with more specimens. If a series of specimens all group together you’re probably on to something. But when they don’t differentiate well with COI- as is the case with the group in the original question- it means other tools are required, tools which are more costly and time consuming.
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There is yet another explanation: provisional misidentification of specimens.
The ID you see for a specimen in a tree must be assigned by a human. If that ID is wholly wrong it will show up there anyway, based on MtDNA. The tree is automated based on COI, not names. If someone IDs a Graphium mullah as T Rex, then it will look like T Rex groups with those butterflies.
For example, in the Tiger Swallowtail trees you will see soon there is an outlier- my nemesis. Amongst all the glaucus is one Papilio alexiares ssp. garcia. This is simply because some moron misidentified a glaucus as the Mexican Papilio alexiares ssp. garcia, and it was uploaded to BOLD with that ID. And, since most studies that use BOLD COI also use that specimens ID, it shows up in the tree that way.
When there are two or more easily misidentified taxa, and the tree is generated, it will show two or more distinct groups, with the named specimens all jumbled up in both or all groups. It just means that many were misidentified.
When I assign an identifier to a specimen it includes location and date. Not name. In a tree you can see what groups together and AH HA moments can arise if the lab test ID has this data. As in, all the AZ P rutulus group together, aside from the main rutulus. When the specimenID is “Jim vacation” it’s useless, you have to research every damned specimen. When a provisional ID is just wrong it will be misleading in the tree. A bit of common sense goes far.
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[misidentification of specimens] happens more than often indeed. Having sampled hundreds of Delias legs myself and put them in little vials... I can tell you that if someone talks to you or phones you in the middle of the process... you don't know where you are and you hesitate to start all over again.
In a study I took part in, the source specimens from the Museums were misidentified... by the Museums. As a result, conclusions of synonymy or differentiation were erroneous. If the scientists put a label on or took photos of the sampled specimens, we can confirm the initial error. Otherwise, it's impossible to know... and even then, it has to be verified.
This is why any DNA analysis must be carried out on SEVERAL specimens per taxon. But this is obviously not possible for rare species in collections. If a DNA study concludes something really strange... the first reflex must be: “can we see photos of the sampled specimens”.
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Re: Christmas Bugs
by livingplanet3 » Thu Dec 12, 2024 7:51 pm
Siderone galanthis -
Parides childrenae -
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Re: A question for Graphium(Pazala) mullah chungianus
by wollastoni » Thu Dec 12, 2024 11:47 am
It happens more than often indeed. Having sampled hundreds of Delias legs myself and put them in little vials... I can tell you that if someone talks to you or phones you in the middle of the process... you don't know where you are and you hesitate to start all over again.
In a study I took part in, the source specimens from the Museums were misidentified... by the Museums. As a result, conclusions of synonymy or differentiation were erroneous. If the scientists put a label on or took photos of the sampled specimens, we can confirm the initial error. Otherwise, it's impossible to know... and even then, it has to be verified.
This is why any DNA analysis must be carried out on SEVERAL specimens per taxon. But this is obviously not possible for rare species in collections. If a DNA study concludes something really strange... the first reflex must be: “can we see photos of the sampled specimens”.
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Re: A question for Graphium(Pazala) mullah chungianus
by adamcotton » Thu Dec 12, 2024 8:21 am
I agree this can happen, and I know of instances in published papers where specimens have been misidentified.
However, in this case there is absolutely no way any specimens were misidentified. My colleague, Dr. Hu, is an expert on Pazala and there are only two species in Taiwan, easy to separate.
Adam.
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Re: A question for Graphium(Pazala) mullah chungianus
by Chuck » Thu Dec 12, 2024 12:17 am
The ID you see for a specimen in a tree must be assigned by a human. If that ID is wholly wrong it will show up there anyway, based on MtDNA. The tree is automated based on COI, not names. If someone IDs a Graphium mullah as T Rex, then it will look like T Rex groups with those butterflies.
For example, in the Tiger Swallowtail trees you will see soon there is an outlier- my nemesis. Amongst all the glaucus is one Papilio alexiares ssp. garcia. This is simply because some moron misidentified a glaucus as the Mexican Papilio alexiares ssp. garcia, and it was uploaded to BOLD with that ID. And, since most studies that use BOLD COI also use that specimens ID, it shows up in the tree that way.
When there are two or more easily misidentified taxa, and the tree is generated, it will show two or more distinct groups, with the named specimens all jumbled up in both or all groups. It just means that many were misidentified.
When I assign an identifier to a specimen it includes location and date. Not name. In a tree you can see what groups together and AH HA moments can arise if the lab test ID has this data. As in, all the AZ P rutulus group together, aside from the main rutulus. When the specimenID is “Jim vacation” it’s useless, you have to research every damned specimen. When a provisional ID is just wrong it will be misleading in the tree. A bit of common sense goes far.
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Re: Christmas Bugs
by kevinkk » Wed Dec 11, 2024 8:10 pm
The species I usually associate with the season are the one's I've raised in the winter, Actias isis, maenas and dubernardi.
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Re: Christmas Bugs
by livingplanet3 » Wed Dec 11, 2024 7:51 pm
Chrysina aurigans (red form) -
Charaxes zingha -
Polygrapha suprema
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Christmas Bugs
by 58chevy » Wed Dec 11, 2024 3:44 pm
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Re: A question for Graphium(Pazala) mullah chungianus
by adamcotton » Wed Dec 11, 2024 2:19 pm
Absolutely agree, and this is the same problem we have found with some other Papilionidae such as P. machaon and G. sarpedon.Chuck wrote: ↑Tue Dec 10, 2024 3:09 pm To be clear COI is useful, and more so with more specimens. If a series of specimens all group together you’re probably on to something. But when they don’t differentiate well with COI- as is the case with the group in the original question- it means other tools are required, tools which are more costly and time consuming.
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Re: A question for Graphium(Pazala) mullah chungianus
by adamcotton » Wed Dec 11, 2024 2:17 pm
Adam.The topology is due to missing taxa in the eurous-mullah group. When we fill in with more data, the topology will change. The tree in any paper of Mitochondrial DNA Part B is required to validate the placement of the sequenced specimen ONLY, not intended for any phylogenetic inference.
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Re: 3 butterflies listed on Endangered Species Act
by Chuck » Wed Dec 11, 2024 1:17 pm
USA won’t bomb the narcotics gangs, so I doubt they will bomb loggers.wollastoni wrote: ↑Tue Dec 10, 2024 8:34 am
I now hope the US Army will bomb all people deforesting in the distribution area of these species..
ESA does have a provision, written into law, that land can be bought to protect a listed species. Theoretically if USFWS really cared enough they could buy that land in Brazil. I won’t hold my breath.
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Re: A question for Graphium(Pazala) mullah chungianus
by Chuck » Tue Dec 10, 2024 3:09 pm
Further, only some specimens of said ssp fall under the other species; but other specimens group oddly, kinda all over the place, including one level up. I believe these inferences to not reflect the real situation, however it has happened for other taxa that “one species” has been split, some elevated, etc.
The lesson is that COI trees for 3’ and 5’ don’t always agree, and any tree built with few, or ONE, specimen are highly suspect to the point of being useless at species level and below. That’s where SNP and other analyses shed more light.
To be clear COI is useful, and more so with more specimens. If a series of specimens all group together you’re probably on to something. But when they don’t differentiate well with COI- as is the case with the group in the original question- it means other tools are required, tools which are more costly and time consuming.